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1.
Viruses ; 14(5)2022 04 30.
Artigo em Inglês | MEDLINE | ID: mdl-35632685

RESUMO

Among novel strategies proposed in pest management, synergistic agents are used to improve insecticide efficacy through an elevation of intracellular calcium concentration that activates the calcium-dependent intracellular pathway. This leads to a changed target site conformation and to increased sensitivity to insecticides while reducing their concentrations. Because virus-like particles (VLPs) increase the intracellular calcium concentration, they can be used as a synergistic agent to synergize the effect of insecticides. VLPs are self-assembled viral protein complexes, and by contrast to entomopathogen viruses, they are devoid of genetic material, which makes them non-infectious and safer than viruses. Although VLPs are well-known to be used in human health, we propose in this study the development of a promising strategy based on the use of VLPs as synergistic agents in pest management. This will lead to increased insecticides efficacy while reducing their concentrations.


Assuntos
Inseticidas , Controle de Pragas , Vírus , Cálcio/metabolismo , Inseticidas/farmacologia , Controle de Pragas/métodos , Proteínas Virais , Vírus/metabolismo
2.
Commun Biol ; 4(1): 665, 2021 06 02.
Artigo em Inglês | MEDLINE | ID: mdl-34079061

RESUMO

In the malaria vector Anopheles gambiae, two point mutations in the acetylcholinesterase (ace-1R) and the sodium channel (kdrR) genes confer resistance to organophosphate/carbamate and pyrethroid insecticides, respectively. The mechanisms of compensation that recover the functional alterations associated with these mutations and their role in the modulation of insecticide efficacy are unknown. Using multidisciplinary approaches adapted to neurons isolated from resistant Anopheles gambiae AcerKis and KdrKis strains together with larval bioassays, we demonstrate that nAChRs, and the intracellular calcium concentration represent the key components of an adaptation strategy ensuring neuronal functions maintenance. In AcerKis neurons, the increased effect of acetylcholine related to the reduced acetylcholinesterase activity is compensated by expressing higher density of nAChRs permeable to calcium. In KdrKis neurons, changes in the biophysical properties of the L1014F mutant sodium channel, leading to enhance overlap between activation and inactivation relationships, diminish the resting membrane potential and reduce the fraction of calcium channels available involved in acetylcholine release. Together with the lower intracellular basal calcium concentration observed, these factors increase nAChRs sensitivity to maintain the effect of low concentration of acetylcholine. These results explain the opposite effects of the insecticide clothianidin observed in AcerKis and KdrKis neurons in vitro and in vivo.


Assuntos
Anopheles/efeitos dos fármacos , Anopheles/genética , Inseticidas/farmacologia , Mosquitos Vetores/efeitos dos fármacos , Mosquitos Vetores/genética , Acetilcolina/farmacologia , Acetilcolinesterase/genética , Animais , Anopheles/metabolismo , Cálcio/metabolismo , Canais de Cálcio/metabolismo , Feminino , Genes de Insetos , Humanos , Técnicas In Vitro , Resistência a Inseticidas/genética , Malária/transmissão , Controle de Mosquitos/métodos , Mosquitos Vetores/metabolismo , Neurônios/efeitos dos fármacos , Neurônios/metabolismo , Técnicas de Patch-Clamp , Mutação Puntual , Receptores Nicotínicos/metabolismo , Canais de Sódio/genética
3.
Front Med Technol ; 3: 778645, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-35146486

RESUMO

Antimicrobial peptides (AMPs) have a great potential to face the global expansion of antimicrobial resistance (AMR) associated to the development of multidrug-resistant (MDR) pathogens. AMPs are usually composed of 10-50 amino acids with a broad structural diversity and present a range of antimicrobial activities. Unfortunately, even if the oral route is the most convenient one, currently approved therapeutic AMPs are mostly administrated by the intravenous route. Thus, the development of novel drug delivery systems (DDSs) represents a promising opportunity to protect AMPs from chemical and enzymatic degradation through the gastrointestinal tract and to increase intestinal permeability leading to high bioavailability. In this review, the classification and properties as well as mechanisms of the AMPs used in infectiology are first described. Then, the different pharmaceutical forms existing in the market for oral administration are presented. Finally, the formulation technologies, including microparticle- and nanoparticle-based DDSs, used to improve the oral bioavailability of AMPs are reviewed.

4.
Sci Rep ; 10(1): 6842, 2020 04 22.
Artigo em Inglês | MEDLINE | ID: mdl-32321987

RESUMO

The insect repellent IR3535 is one of the important alternative in the fight against mosquito-borne disease such as malaria, dengue, chikungunya, yellow fever and Zika. Using a multidisciplinary approach, we propose the development of an innovative insecticide-based vector control strategy using an unexplored property of IR3535. We have demonstrated that in insect neurosecretory cells, very low concentration of IR3535 induces intracellular calcium rise through cellular mechanisms involving orthosteric/allosteric sites of the M1-muscarinic receptor subtype, G protein ßγ subunits, background potassium channel inhibition generating depolarization, which induces voltage-gated calcium channel activation. The resulting internal calcium concentration elevation increases nicotinic receptor sensitivity to the neonicotinoid insecticide thiacloprid. The synergistic interaction between IR3535 and thiacloprid contributes to significantly increase the efficacy of the treatment while reducing concentrations. In this context, IR3535, used as a synergistic agent, seems to promise a new approach in the optimization of the integrated vector management for vector control.


Assuntos
Controle de Insetos , Proteínas de Insetos/metabolismo , Insetos Vetores/metabolismo , Inseticidas/farmacologia , Periplaneta/metabolismo , Receptores Muscarínicos/metabolismo , beta-Alanina/análogos & derivados , Animais , Masculino , beta-Alanina/farmacologia
5.
Curr Opin Insect Sci ; 30: 52-58, 2018 12.
Artigo em Inglês | MEDLINE | ID: mdl-30553485

RESUMO

Integrated Pest Management and Integrated Vector Management worldwide are developed in agriculture and public health to counteract and limit the exponential increasing development of insect resistance to insecticides. However, facing the predominance of some resistant populations, new strategies are urgently needed to target resistant insects. An innovative approach lies in the optimization of commonly used insecticides when combined with chemical or biological synergistic agents. By an increase of intracellular calcium concentration followed by activation of calcium-dependant signalling pathways, the synergistic agents are able to indirectly increase target sites sensitivity to insecticide by inducing conformational change. The synergistic agents are of great interest in optimizing the efficacy of insecticides and in overcoming resistance mechanisms.


Assuntos
Cálcio/química , Controle de Insetos/métodos , Insetos , Resistência a Inseticidas/fisiologia , Inseticidas/química , Animais
6.
Neurotoxicology ; 62: 239-247, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28811174

RESUMO

Neonicotinoids are the most important class of insecticides used in agriculture over the last decade. They act as selective agonists of insect nicotinic acetylcholine receptors (nAChRs). The emergence of insect resistance to these insecticides is one of the major problems, which limit the use of neonicotinoids. The aim of our study is to better understand physiological changes appearing after subchronic exposure to sublethal doses of insecticide using complementary approaches that include toxicology, electrophysiology, molecular biology and calcium imaging. We used cockroach neurosecretory cells identified as dorsal unpaired median (DUM) neurons, known to express two α-bungarotoxin-insensitive (α-bgt-insensitive) nAChR subtypes, nAChR1 and nAChR2, which differ in their sensitivity to imidacloprid. Although nAChR1 is sensitive to imidacloprid, nAChR2 is insensitive to this insecticide. In this study, we demonstrate that subchronic exposure to sublethal dose of imidacloprid differentially changes physiological and molecular properties of nAChR1 and nAChR2. Our findings reported that this treatment decreased the sensitivity of nAChR1 to imidacloprid, reduced current density flowing through this nAChR subtype but did not affect its subunit composition (α3, α8 and ß1). Subchronic exposure to sublethal dose of imidacloprid also affected nAChR2 functions. However, these effects were different from those reported on nAChR1. We observed changes in nAChR2 conformational state, which could be related to modification of the subunit composition (α1, α2 and ß1). Finally, the subchronic exposure affecting both nAChR1 and nAChR2 seemed to be linked to the elevation of the steady-state resting intracellular calcium level. In conclusion, under subchronic exposure to sublethal dose of imidacloprid, cockroaches are capable of triggering adaptive mechanisms by reducing the participation of imidacloprid-sensitive nAChR1 and by optimizing functional properties of nAChR2, which is insensitive to this insecticide.


Assuntos
Regulação da Expressão Gênica/efeitos dos fármacos , Potenciais da Membrana/efeitos dos fármacos , Neonicotinoides/farmacologia , Neurônios/efeitos dos fármacos , Nitrocompostos/farmacologia , Receptores Nicotínicos/metabolismo , Animais , Cálcio/metabolismo , Relação Dose-Resposta a Droga , Gânglios dos Invertebrados/citologia , Masculino , Técnicas de Patch-Clamp , Periplaneta , RNA Mensageiro/metabolismo , Receptores Nicotínicos/genética , Estatísticas não Paramétricas
7.
Curr Med Chem ; 24(27): 2959-2973, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28292241

RESUMO

Microorganisms (viruses, bacteria and fungi) or their bioactive agents can be used as active substances and therefore are referred as Microbial Pest Control Agents (MPCA). They are used as alternative strategies to chemical insecticides to counteract the development of resistances and to reduce adverse effects on both environment and human health. These natural entomopathogenic agents, which have specific modes of action, are generally considered safer as compared to conventional chemical insecticides. Baculoviruses are the only viruses being used as the safest biological control agents. They infect insects and have narrow host ranges. Bacillus thuringiensis (Bt) is the most widely and successfully used bioinsecticide in the integrated pest management programs in the world. Bt mainly produces crystal delta-endotoxins and secreted toxins. However, the Bt toxins are not stable for a very long time and are highly sensitive to solar UV. So genetically modified plants that express toxins have been developed and represent a large part of the phytosanitary biological products. Finally, entomopathogenic fungi and particularly, Beauveria bassiana and Metarhizium anisopliae, are also used for their insecticidal properties. Most studies on various aspects of the safety of MPCA to human, non-target organisms and environment have only reported acute but not chronic toxicity. This paper reviews the modes of action of MPCA, their toxicological risks to human health and ecotoxicological profiles together with their environmental persistence. This review is part of the special issue "Insecticide Mode of Action: From Insect to Mammalian Toxicity".


Assuntos
Ascomicetos/patogenicidade , Bacillus thuringiensis/patogenicidade , Baculoviridae/patogenicidade , Controle de Pragas , Animais , Ascomicetos/metabolismo , Bacillus thuringiensis/metabolismo , Baculoviridae/metabolismo , Endotoxinas/isolamento & purificação , Endotoxinas/metabolismo , Endotoxinas/toxicidade , Inseticidas/isolamento & purificação , Inseticidas/metabolismo , Inseticidas/toxicidade
8.
Environ Microbiol ; 17(11): 4566-79, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26178789

RESUMO

Virulence traits are essential for pathogen fitness, but whether they affect microbial performance in the environment, where they are not needed, remains experimentally unconfirmed. We investigated this question with the facultative pathogen Listeria monocytogenes and its PrfA virulence regulon. PrfA-regulated genes are activated intracellularly (PrfA 'ON') but shut down outside the host (PrfA 'OFF'). Using a mutant PrfA regulator locked ON (PrfA*) and thus causing PrfA-controlled genes to be constitutively activated, we show that virulence gene expression significantly impairs the listerial growth rate (µ) and maximum growth (A) in rich medium. Deletion analysis of the PrfA regulon and complementation of a L. monocytogenes mutant lacking all PrfA-regulated genes with PrfA* indicated that the growth reduction was specifically due to the unneeded virulence determinants and not to pleiotropic regulatory effects of PrfA ON. No PrfA*-associated fitness disadvantage was observed in infected eukaryotic cells, where PrfA-regulated virulence gene expression is critical for survival. Microcosm experiments demonstrated that the constitutively virulent state strongly impaired L. monocytogenes performance in soil, the natural habitat of these bacteria. Our findings provide empirical proof that virulence carries a significant cost to the pathogen. They also experimentally substantiate the assumed, although not proven, key role of virulence gene regulation systems in suppressing the cost of bacterial virulence outside the host.


Assuntos
Proteínas de Bactérias/genética , Regulação Bacteriana da Expressão Gênica/genética , Interações Hospedeiro-Patógeno , Listeria monocytogenes/patogenicidade , Fatores de Terminação de Peptídeos/genética , Fatores de Virulência/genética , Células HeLa , Humanos , Listeria monocytogenes/genética , Listeria monocytogenes/crescimento & desenvolvimento , Regulon , Microbiologia do Solo , Transativadores/genética
9.
PLoS Negl Trop Dis ; 7(11): e2502, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24244764

RESUMO

BACKGROUND: Mycobacterium ulcerans, a slow-growing environmental bacterium, is the etiologic agent of Buruli ulcer, a necrotic skin disease. Skin lesions are caused by mycolactone, the main virulence factor of M. ulcerans, with dermonecrotic (destruction of the skin and soft tissues) and immunosuppressive activities. This toxin is secreted in vesicles that enhance its biological activities. Nowadays, it is well established that the main reservoir of the bacilli is localized in the aquatic environment where the bacillus may be able to colonize different niches. Here we report that plant polysaccharides stimulate M. ulcerans growth and are implicated in toxin synthesis regulation. METHODOLOGY/PRINCIPAL FINDINGS: In this study, by selecting various algal components, we have identified plant-specific carbohydrates, particularly glucose polymers, capable of stimulating M. ulcerans growth in vitro. Furthermore, we underscored for the first time culture conditions under which the polyketide toxin mycolactone, the sole virulence factor of M. ulcerans identified to date, is down-regulated. Using a quantitative proteomic approach and analyzing transcript levels by RT-qPCR, we demonstrated that its regulation is not at the transcriptional or translational levels but must involve another type of regulation. M. ulcerans produces membrane vesicles, as other mycobacterial species, in which are the mycolactone is concentrated. By transmission electron microscopy, we observed that the production of vesicles is independent from the toxin production. Concomitant with this observed decrease in mycolactone production, the production of mycobacterial siderophores known as mycobactins was enhanced. CONCLUSIONS/SIGNIFICANCE: This work is the first step in the identification of the mechanisms involved in mycolactone regulation and paves the way for the discovery of putative new drug targets in the future.


Assuntos
Macrolídeos/metabolismo , Mycobacterium ulcerans/metabolismo , Proteômica , Reação em Cadeia da Polimerase Via Transcriptase Reversa
10.
Mol Microbiol ; 85(3): 461-77, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22646689

RESUMO

The transcriptional regulator PrfA controls key virulence determinants of the facultative intracellular pathogen Listeria monocytogenes. PrfA-dependent gene expression is strongly induced within host cells. While the basis of this activation is unknown, the structural homology of PrfA with the cAMP receptor protein (Crp) and the finding of constitutively activated PrfA* mutants suggests it may involve ligand-induced allostery. Here, we report the identification of a solvent-accessible cavity within the PrfA N-terminal domain that may accommodate an activating ligand. The pocket occupies a similar position to the cAMP binding site in Crp but lacks the cyclic nucleotide-anchoring motif and has its entrance on the opposite side of the ß-barrel. Site-directed mutations in this pocket impaired intracellular PrfA-dependent gene activation without causing extensive structural/functional alterations to PrfA. Two substitutions, L48F and Y63W, almost completely abolished intracellular virulence gene induction and thus displayed the expected phenotype for allosteric activation-deficient PrfA mutations. Neither PrfA(allo) substitution affected vacuole escape and initial intracellular growth of L. monocytogenes in epithelial cells and macrophages but caused defective cell-to-cell spread and strong attenuation in mice. Our data support the hypothesis that PrfA is allosterically activated during intracellular infection and identify the probable binding site for the effector ligand. They also indicate that PrfA allosteric activation is not required for early intracellular survival but is essential for full Listeria virulence and colonization of host tissues.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Listeria monocytogenes/genética , Listeria monocytogenes/patogenicidade , Mutação , Fatores de Terminação de Peptídeos/química , Fatores de Terminação de Peptídeos/genética , Ativação Transcricional , Regulação Alostérica/genética , Sequência de Aminoácidos , Substituição de Aminoácidos , Animais , Sítios de Ligação , Linhagem Celular , AMP Cíclico/metabolismo , Feminino , Camundongos , Camundongos Endogâmicos BALB C , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Fagossomos/metabolismo , Conformação Proteica , Domínios e Motivos de Interação entre Proteínas , Alinhamento de Sequência , Vacúolos , Virulência/genética
11.
Can J Microbiol ; 58(3): 311-7, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22356530

RESUMO

The aim of this study was to unravel, by focusing on cell surface properties, the underlying virulence factors contributing to the difference in the pathogenicity observed in two Acinetobacter baumannii strains isolated from the same patient. The two strains were phenotypically different: (i) a mucoid strain (AB-M), highly virulent in a mouse model of pneumonia, and (ii) a nonmucoid strain (AB-NM), moderately virulent in the same model. The study of the cell surface properties included the microbial adhesion to solvents method, the measurement of the electrophoretic mobility of bacteria, the analysis of biofilm formation by calcofluor white staining, the adherence to silicone catheters, and scanning electron microscopy. The AB-NM strain was more hydrophobic, more adherent to silicone catheters, and produced more biofilm than the AB-M strain. Scanning electron microscopy showed bacterial cells with a rough surface and the formation of large cell clusters for AB-NM whereas the AB-M strain had a smooth surface and formed only a few cell clusters. Contrary to the results of most previous studies, cell surface properties were not correlated to the virulence described in our experimental model, indicating that mechanisms other than adherence may be involved in the expression of A. baumannii virulence.


Assuntos
Acinetobacter baumannii/metabolismo , Acinetobacter baumannii/patogenicidade , Virulência/fisiologia , Acinetobacter baumannii/isolamento & purificação , Acinetobacter baumannii/ultraestrutura , Animais , Aderência Bacteriana , Cápsulas Bacterianas/metabolismo , Cápsulas Bacterianas/ultraestrutura , Biofilmes , Catéteres/microbiologia , Humanos , Interações Hidrofóbicas e Hidrofílicas , Camundongos , Microscopia Eletrônica de Varredura , Propriedades de Superfície , Fatores de Virulência/metabolismo
12.
Mol Microbiol ; 78(4): 989-1003, 2010 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21062372

RESUMO

The MmpS family (mycobacterial membrane protein small) includes over 100 small membrane proteins specific to the genus Mycobacterium that have not yet been studied experimentally. The genes encoding MmpS proteins are often associated with mmpL genes, which are homologous to the RND (resistance nodulation cell division) genes of Gram-negative bacteria that encode proteins functioning as multidrug efflux system. We showed by molecular genetics and biochemical analysis that MmpS4 in Mycobacterium smegmatis is required for the production and export of large amounts of cell surface glycolipids, but is dispensable for biosynthesis per se. A new specific and sensitive method utilizing single-chain antibodies against the surface-exposed glycolipids was developed to confirm that MmpS4 was dispensable for transport to the surface. Orthologous complementation demonstrated that the MmpS4 proteins are exchangeable, thus not specific to a defined lipid species. MmpS4 function requires the formation of a protein complex at the pole of the bacillus, which requires the extracytosolic C-terminal domain of MmpS4. We suggest that MmpS proteins facilitate lipid biosynthesis by acting as a scaffold for coupled biosynthesis and transport machinery.


Assuntos
Proteínas de Bactérias/metabolismo , Glicolipídeos/metabolismo , Glicopeptídeos/metabolismo , Proteínas de Membrana/metabolismo , Mycobacterium smegmatis/metabolismo , Proteínas de Bactérias/genética , Teste de Complementação Genética , Proteínas de Membrana/genética , Mycobacterium smegmatis/genética , Anticorpos de Cadeia Única/imunologia
13.
PLoS Negl Trop Dis ; 4(7): e731, 2010 Jul 06.
Artigo em Inglês | MEDLINE | ID: mdl-20625552

RESUMO

BACKGROUND: Buruli ulcer, the third mycobacterial disease after tuberculosis and leprosy, is caused by the environmental mycobacterium M. ulcerans. Various modes of transmission have been suspected for this disease, with no general consensus acceptance for any of them up to now. Since laboratory models demonstrated the ability of water bugs to transmit M. ulcerans, a particular attention is focused on the transmission of the bacilli by water bugs as hosts and vectors. However, it is only through detailed knowledge of the biodiversity and ecology of water bugs that the importance of this mode of transmission can be fully assessed. It is the objective of the work here to decipher the role of water bugs in M. ulcerans ecology and transmission, based on large-scale field studies. METHODOLOGY/PRINCIPAL FINDINGS: The distribution of M. ulcerans-hosting water bugs was monitored on previously unprecedented time and space scales: a total of 7,407 water bugs, belonging to large number of different families, were collected over one year, in Buruli ulcer endemic and non endemic areas in central Cameroon. This study demonstrated the presence of M. ulcerans in insect saliva. In addition, the field results provided a full picture of the ecology of transmission in terms of biodiversity and detailed specification of seasonal and regional dynamics, with large temporal heterogeneity in the insect tissue colonization rate and detection of M. ulcerans only in water bug tissues collected in Buruli ulcer endemic areas. CONCLUSION/SIGNIFICANCE: The large-scale detection of bacilli in saliva of biting water bugs gives enhanced weight to their role in M. ulcerans transmission. On practical grounds, beyond the ecological interest, the results concerning seasonal and regional dynamics can provide an efficient tool in the hands of sanitary authorities to monitor environmental risks associated with Buruli ulcer.


Assuntos
Vetores de Doenças , Heterópteros/microbiologia , Mycobacterium ulcerans/isolamento & purificação , Animais , Úlcera de Buruli/transmissão , Camarões , Modelos Animais de Doenças , Feminino , Geografia , Humanos , Camundongos , Camundongos Endogâmicos BALB C , Saliva/microbiologia , Estações do Ano
14.
Genome Res ; 19(1): 128-35, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-18955433

RESUMO

The progress in sequencing technologies irrigates biology with an ever-increasing number of genome sequences. In most cases, the gene repertoire is predicted in silico and conceptually translated into proteins. As recently highlighted, the predicted genes exhibit frequent errors, particularly in start codons, with a serious impact on subsequent biological studies. A new "ortho-proteogenomic" approach is presented here for the annotation refinement of multiple genomes at once. It combines comparative genomics with an original proteomic protocol that allows the characterization of both N-terminal and internal peptides in a single experiment. This strategy was applied to the Mycobacterium genus with Mycobacterium smegmatis as the reference, and identified 946 distinct proteins, including 443 characterized N termini. These experimental data allowed the correction of 19% of the characterized start codons, the identification of 29 proteins missed during the annotation process, and the curation, thanks to comparative genomics, of 4328 sequences of 16 other Mycobacterium proteomes.


Assuntos
Genômica/métodos , Proteômica/métodos , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Códon de Iniciação/genética , Genoma Bacteriano , Espectrometria de Massas , Mycobacterium/química , Mycobacterium/genética , Mycobacterium smegmatis/química , Mycobacterium smegmatis/genética , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/isolamento & purificação , Proteoma , RNA Bacteriano/genética , Alinhamento de Sequência , Especificidade da Espécie
15.
BMC Evol Biol ; 8: 78, 2008 Mar 06.
Artigo em Inglês | MEDLINE | ID: mdl-18325090

RESUMO

BACKGROUND: Computer-assisted analyses have shown that all bacterial genomes contain a small percentage of open reading frames with a frameshift or in-frame stop codon We report here a comparative analysis of these interrupted coding sequences (ICDSs) in six isolates of M. tuberculosis, two of M. bovis and one of M. africanum and question their phenotypic impact and evolutionary significance. RESULTS: ICDSs were classified as "common to all strains" or "strain-specific". Common ICDSs are believed to result from mutations acquired before the divergence of the species, whereas strain-specific ICDSs were acquired after this divergence. Comparative analyses of these ICDSs therefore define the molecular signature of a particular strain, phylogenetic lineage or species, which may be useful for inferring phenotypic traits such as virulence and molecular relationships. For instance, in silico analysis of the W-Beijing lineage of M. tuberculosis, an emergent family involved in several outbreaks, is readily distinguishable from other phyla by its smaller number of common ICDSs, including at least one known to be associated with virulence. Our observation was confirmed through the sequencing analysis of ICDSs in a panel of 21 clinical M. tuberculosis strains. This analysis further illustrates the divergence of the W-Beijing lineage from other phyla in terms of the number of full-length ORFs not containing a frameshift. We further show that ICDS formation is not associated with the presence of a mutated promoter, and suggest that promoter extinction is not the main cause of pseudogene formation. CONCLUSION: The correlation between ICDSs, function and phenotypes could have important evolutionary implications. This study provides population geneticists with a list of targets, which could undergo selective pressure and thus alters relationships between the various lineages of M. tuberculosis strains and their host. This approach could be applied to any closely related bacterial strains or species for which several genome sequences are available.


Assuntos
DNA Bacteriano/genética , Evolução Molecular , Mycobacterium bovis/genética , Mycobacterium tuberculosis/genética , Fases de Leitura Aberta , Técnicas de Tipagem Bacteriana , Mutação da Fase de Leitura , Genoma Bacteriano , Mycobacterium bovis/classificação , Mycobacterium tuberculosis/classificação , Filogenia , Análise de Sequência de DNA , Especificidade da Espécie
16.
BMC Genomics ; 8: 114, 2007 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-17490474

RESUMO

BACKGROUND: The outermost layer of the bacterial surface is of crucial importance because it is in constant interaction with the host. Glycopeptidolipids (GPLs) are major surface glycolipids present on various mycobacterial species. In the fast-grower model organism Mycobacterium smegmatis, GPL biosynthesis involves approximately 30 genes all mapping to a single region of 65 kb. RESULTS: We have recently sequenced the complete genomes of two fast-growers causing human infections, Mycobacterium abscessus (CIP 104536T) and M. chelonae (CIP 104535T). We show here that these two species contain genes corresponding to all those of the M. smegmatis "GPL locus", with extensive conservation of the predicted protein sequences consistent with the production of GPL molecules indistinguishable by biochemical analysis. However, the GPL locus appears to be split into several parts in M. chelonae and M. abscessus. One large cluster (19 genes) comprises all genes involved in the synthesis of the tripeptide-aminoalcohol moiety, the glycosylation of the lipopeptide and methylation/acetylation modifications. We provide evidence that a duplicated acetyltransferase (atf1 and atf2) in M. abscessus and M. chelonae has evolved through specialization, being able to transfer one acetyl at once in a sequential manner. There is a second smaller and distant (M. chelonae, 900 kb; M. abscessus, 3 Mb) cluster of six genes involved in the synthesis of the fatty acyl moiety and its attachment to the tripeptide-aminoalcohol moiety. The other genes are scattered throughout the genome, including two genes encoding putative regulatory proteins. CONCLUSION: Although these three species produce identical GPL molecules, the organization of GPL genes differ between them, thus constituting species-specific signatures. An hypothesis is that the compact organization of the GPL locus in M. smegmatis represents the ancestral form and that evolution has scattered various pieces throughout the genome in M. abscessus and M. chelonae.


Assuntos
Vias Biossintéticas/genética , Genoma Bacteriano/genética , Glicolipídeos/genética , Glicopeptídeos/genética , Mycobacterium chelonae/genética , Acetiltransferases/genética , Sequência de Bases , Cromatografia em Camada Fina , Evolução Molecular , Glicolipídeos/biossíntese , Glicopeptídeos/biossíntese , Dados de Sequência Molecular , Análise de Sequência de DNA , Especificidade da Espécie , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
17.
Genome Biol ; 8(2): R20, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17295914

RESUMO

BACKGROUND: In silico analysis has shown that all bacterial genomes contain a low percentage of ORFs with undetected frameshifts and in-frame stop codons. These interrupted coding sequences (ICDSs) may really be present in the organism or may result from misannotation based on sequencing errors. The reality or otherwise of these sequences has major implications for all subsequent functional characterization steps, including module prediction, comparative genomics and high-throughput proteomic projects. RESULTS: We show here, using Mycobacterium smegmatis as a model species, that a significant proportion of these ICDSs result from sequencing errors. We used a resequencing procedure and mass spectrometry analysis to determine the nature of a number of ICDSs in this organism. We found that 28 of the 73 ICDSs investigated correspond to sequencing errors. CONCLUSION: The correction of these errors results in modification of the predicted amino acid sequences of the corresponding proteins and changes in annotation. We suggest that each bacterial ICDS should be investigated individually, to determine its true status and to ensure that the genome sequence is appropriate for comparative genomics analyses.


Assuntos
Mutação da Fase de Leitura/genética , Genômica/métodos , Mycobacterium smegmatis/genética , Projetos de Pesquisa , Análise de Sequência de DNA/métodos , Cromatografia Líquida , Biologia Computacional , Eletroforese em Gel Bidimensional , Espectrometria de Massas em Tandem
18.
Nucleic Acids Res ; 34(Database issue): D338-43, 2006 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-16381882

RESUMO

Unrecognized frameshifts, in-frame stop codons and sequencing errors lead to Interrupted CoDing Sequence (ICDS) that can seriously affect all subsequent steps of functional characterization, from in silico analysis to high-throughput proteomic projects. Here, we describe the Interrupted CoDing Sequence database containing ICDS detected by a similarity-based approach in 80 complete prokaryotic genomes. ICDS can be retrieved by species browsing or similarity searches via a web interface (http://www-bio3d-igbmc.u-strasbg.fr/ICDS/). The definition of each interrupted gene is provided as well as the ICDS genomic localization with the surrounding sequence. Furthermore, to facilitate the experimental characterization of ICDS, we propose optimized primers for re-sequencing purposes. The database will be regularly updated with additional data from ongoing sequenced genomes. Our strategy has been validated by three independent tests: (i) ICDS prediction on a benchmark of artificially created frameshifts, (ii) comparison of predicted ICDS and results obtained from the comparison of the two genomic sequences of Bacillus licheniformis strain ATCC 14580 and (iii) re-sequencing of 25 predicted ICDS of the recently sequenced genome of Mycobacterium smegmatis. This allows us to estimate the specificity and sensitivity (95 and 82%, respectively) of our program and the efficiency of primer determination.


Assuntos
Códon de Terminação , Bases de Dados Genéticas , Mutação da Fase de Leitura , Genoma Arqueal , Genoma Bacteriano , Bacillus/genética , Genômica , Internet , Mycobacterium smegmatis/genética , Homologia de Sequência de Aminoácidos , Interface Usuário-Computador
19.
J Bacteriol ; 187(21): 7283-91, 2005 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-16237011

RESUMO

The cell envelope of mycobacteria is a complex structure that plays an important role in the interactions of the cell with its environment and in the protection against the antimicrobial activity of the immune system. Glycopeptidolipids (GPLs) are species- or type species-specific glycolipids that are present at the surface of a number of mycobacteria and that are characterized by a high variability in glycosylation patterns. These GPLs possess various biological activities that depend mostly on the sugars capping the core molecule. In Mycobacterium smegmatis, the GPL core can be substituted by either two or three deoxyhexoses. In this study, we show that Gtf3 is a glycosyltransferase responsible for the synthesis of the triglycosylated GPLs. Biochemical analysis of these molecules, with a combination of mass spectrometry and chemical degradation methods, has shown that they contain three deoxyhexose moieties. The presence of the triglycosylated GPLs is associated with cell surface modifications that lead to a decrease in sliding motility as well as a modification in cellular aggregation and colony appearance on Congo red. Phylogenetic analysis indicated that Gtf3 is a member of a yet-uncharacterized glycosyltransferase family conserved among the mycobacteria.


Assuntos
Glicolipídeos/biossíntese , Glicopeptídeos/biossíntese , Glicosiltransferases/metabolismo , Mycobacterium smegmatis/enzimologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Glicoconjugados/química , Glicolipídeos/química , Glicopeptídeos/química , Glicosilação , Glicosiltransferases/genética , Hexoses/análise , Hexoses/isolamento & purificação , Espectrometria de Massas , Movimento , Mycobacterium smegmatis/metabolismo , Mycobacterium smegmatis/fisiologia , Filogenia , Propriedades de Superfície
20.
Mol Microbiol ; 58(2): 426-40, 2005 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-16194230

RESUMO

The cell envelope of mycobacteria is a complex multilaminar structure that protects the cell from stresses encountered in the environment, and plays an important role against the bactericidal activity of immune system cells. The outermost layer of the mycobacterial envelope typically contains species-specific glycolipids. Depending on the mycobacterial species, the major glycolipid localized at the surface can be either a phenolglycolipid or a peptidoglycolipid (GPL). Currently, the mechanism of how these glycolipids are addressed to the cell surface is not understood. In this study, by using a transposon library of Mycobacterium smegmatis and a simple dye assay, six genes involved in GPLs synthesis have been characterized. All of these genes are clustered in a single genomic region of approximately 60 kb. We show by biochemical analyses that two non-ribosomal peptide synthetases, a polyketide synthase, a methyltransferase and a member of the MmpL family are required for the biosynthesis of the GPLs backbone. Furthermore, we demonstrate that a small integral membrane protein of 272 amino acids named Gap (gap: GPL addressing protein) is specifically required for the transport of the GPLs to the cell surface. This protein is predicted to contain six transmembrane segments and possesses homologues across the mycobacterial genus, thus delineating a new protein family. This Gap family represents a new paradigm for the transport of small molecules across the mycobacterial envelope, a critical determinant of mycobacterial virulence.


Assuntos
Proteínas de Bactérias/metabolismo , Membrana Celular/metabolismo , Glicolipídeos/metabolismo , Proteínas de Membrana/metabolismo , Mycobacterium smegmatis/metabolismo , Proteínas de Bactérias/química , Teste de Complementação Genética , Glicolipídeos/química , Proteínas de Membrana/genética , Dados de Sequência Molecular , Estrutura Molecular , Mycobacterium smegmatis/genética , Mycobacterium smegmatis/ultraestrutura , Frações Subcelulares/química , Frações Subcelulares/metabolismo
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